(Epi)genome replication

(Epi)genome replication - Publications

• Fajri N, Petryk N^#. Monitoring and quantifying replication fork dynamics with high-throughput methods. Commun Biol. 2024 Jun 14;7(1):729. doi: 10.1038/s42003-024-06412-1.
• Wu X*, Liu Y*, Daubenton-Carafa Y ; Thermes C ; Chen CL#, Hyrien O#, Petryk N#. Genome-wide measurement of DNA replication fork directionality and quantification of DNA replication initiation and termination with Okazaki fragment sequencing. Nature protocols. 2023 Apr;18(4):1260-1295. doi: 10.1038/s41596-022-00793-5.
• DeWeerd RA,Németh E, Póti Á, Petryk N, Chen CL, Hyrien O, Szüts D, Green AM. Cell Reports 2022; 38 (12), 110555.
• Petryk N*, Reverón-Gómez N*, González-Aguilera C*, Dalby M, Andersson R, Groth A. Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq technologies. Nature protocols. 2021 Sep;16(9):4446-4493. doi: 10.1038/s41596-021-00585-3.
• Blin M, Lacroix L, Petryk N, Jaszczyszyn Y, Chen C, Hyrien O, Le Tallec B. DNA molecular combing-based replication fork directionality profiling. Nucleic acids research. 2021 Jul 9;49(12):e69. doi: 10.1093/nar/gkab219.
• Petryk N, Bultmann S, Bartke T, and Defossez, P.A. Staying true to yourself: mechanisms of DNA methylation maintenance in mammals. Nucleic acids research. 2021 Apr 6;49(6):3020-3032. doi: 10.1093/nar/gkaa1154. Review. Highlighted at the cover page. Stewart-Morgan KR, Petryk N, Groth A. Chromatin Replication and Epigenetic Cell Memory. Nat. Cell Biol. 2020 Apr;22(4):361-371 17.728. Review.
• Wu X*, Kabalane H*, Kahli M, Petryk N, Laperrousaz B, Jaszczyszyn Y, Drillon G, Nicolini FE, Perot G, Robert A, Fund C, Chibon F, Xia R, Wiels J, Argoul F, Maguer-Satta V, Arneodo A, Audit B, Hyrien O. Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions. Nucleic Acids Research. 2018.
• Reverón-Gómez N*, González-Aguilera C*, Stewart-Morgan KR*, Petryk N, Flury V, Graziano S, Johansen JV, Jakobsen JS, Alabert C, Groth A. Accurate Recycling of Parental Histones Reproduces the Histone Modification Landscape during DNA Replication. Molecular Cell.
• Petryk N*, Dalby M*, Wenger A, Strømme CB, Strandsby A, Andersson R, Groth A. MCM2 promotes symmetric inheritance of modified histones during DNA replication. Science. 2018.
• Petryk N, Kahli M, d'Aubenton-Carafa Y, Jaszczyszyn Y, Shen Y, Silvain M, Thermes C, Chen C. L., Hyrien, O. Replication landscape of the human genome. Nat Commun. 2016;7:10208.