Computational biology and biology of non melanoma skin cancers

Computational biology and biology of non melanoma skin cancers - Major publications

• Ximena Bonilla, Laurent Parmentier, Bryan King, Fedor Bezrukov, Gürkan Kaya, Vincent  Zoete, Vladimir B. Seplyarskiy, Hayley J. Sharpe, Thomas McKee, Audrey Letourneau,  Pascale G. Ribaux, Konstantin Popadin, Nicole Basset-Seguin, Rouaa Ben Chaabene, Maria  A. Andrianova, Michel Guipponi1, Marco Garieri, Carole Verdan, Kerstin Grosdemange,  Olga Sumara, Martin Eilers, Iannis Aifantis, Olivier Michielin, Frederic J. de Sauvage, Stylianos E. Antonarakis, SERGEY NIKOLAEV. Genomic analysis identifies novel drivers and progression pathways in skin basal cell carcinoma. Nature Genetics. 48(4):398-406, 2016.
  Impact factor: 36.4. Number of citations: 153.
• SERGEY NIKOLAEV, Sandra Vetiska, Ximena Bonilla, Emilie Boudreau, Suvi Jauhiainen, Behnam Rezai Jahromi, Nadiya Khyzha, Peter DiStefano, Santeri Suutarinen, Tim-Rasmus Kiehl, Vitor Mendes Pereira, Timo Krings, Hugo Andrade-Barazarte, Takyee Tung, Taufik Valiante, Gelareh Zadeh, Mike Tymianski, Tuomas Rauramaa, Seppo Ylä-Herttuala, Stylianos E. Antonarakis, Joshua D. Wythe, Juhana Frösen, Jason E. Fish, Ivan Radovanovic. Somatic activating KRAS mutations in brain arteriovenous malformations. N Engl J Med N Engl J Med. 2018 Jan 3.
  Impact factor: 72.4. Number of citations: 68.
•  Seplyarskiy, Vladimir B; Soldatov, Ruslan A; Popadin, Konstantin Y; Antonarakis, Stylianos E; Bazykin, Georgii A; SERGEY NIKOLAEV. APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication. Genome research, 26(2):174-82, 2016
  Impact factor: 14.6. Number of citations: 53. 
• SERGEY NIKOLAEV; Rimoldi, Donata; Iseli, Christian; Valsesia, Armand; Robyr, Daniel; Gehrig, Corinne; Harshman, Keith; Guipponi, Michel; Bukach, Olesya; Zoete, Vincent; Olivier Michielin, Katja Muehlethaler, Daniel Speiser, Jacques S. Beckmann, Ioannis Xenarios, Thanos D. Halazonetis, Victor Jongeneel, Bryan J. Stevenson, Stylianos E. Antonarakis. Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma. Nature genetics, 44, 2,133-139, 2012
  Impact factor: 36.4. Number of citations: 352.
•  SERGEY NIKOLAEV; Santoni, Federico; Vannier, Anne; Falconnet, Emilie; Giarin, Emanuela; Basso, Giuseppe; Hoischen, Alexander; Veltman, Joris A; Groet, Jurgen; Nizetic, Dean; Antonarakis Stylianos E. Exome sequencing identifies putative drivers of progression of transient myeloproliferative disorder to AMKL in infants with Down syndrome. Blood, 122, 4,554-561, 2013
  Impact factor: 10.5. Number of citations: 40
• SERGEY NIKOLAEV; Garieri, Marco; Santoni, Federico; Falconnet, Emilie; Ribaux, Pascale; Guipponi, Michel; Murray, Aoife; Groet, Jürgen; Giarin, Emanuela; Basso, Giuseppe; Nizetic, Dean; Antonarakis Stylianos E. Frequent cases of RAS-mutated Down syndrome acute lymphoblastic leukaemia lack JAK2 mutations. Nature communications, 5, 2014
  Impact factor: 11.5. Number of citations: 32
• Andrianova Maria, Chetan Ghati Kasturirangan, Sibin Madathan Kandi, Mckee Thomas, Merkler Doron, Narasinga Rao K.V.L., Ribaux Pasсale, Blouin Jean-Louis, Makrythanasis Periklis, Seplyarskiy Vladimir B. , Antonarakis Stylianos E. and SERGEY NIKOLAEV. Germline PMS2 and somatic POLEexo mutations cause hypermutability of the leading DNA strand in the bMMRD syndrome brain tumors. J Pathol. 2017 Aug 14. doi: 10.1002/path.4957.
  Impact factor: 7.5. Number of citations: 7
• Fiamma Berner, David Bomze, Stefan Diem, Omar Hasan Ali, Mirjam Fässler, Sandra Ring, Rebekka Niederer, Christoph J. Ackermann, Petra Baumgaertner, Natalia Pikor, Cristina Gil Cruz, Willem van de Veen, Mübeccel Akdis, SERGEY NIKOLAEV, Heinz Läubli, Alfred Zippelius, Fabienne Hartmann, Hung-Wei Cheng, Gideon Hönger, Mike Recher, Jonathan Goldman, Antonio Cozzio, Martin Früh, Sjaak Neefjes, Christoph Driessen, Burkhard Ludewig, Ahmed N. Hegazy, Wolfram Jochum, Daniel E. Speiser, Lukas Flatz. Anti-PD-1 induced toxicity reveals shared cancer and tissue antigens. 2019. JAMA Oncology (accepted).
  Impact factor: 20.8. Number of citations: 24
• SERGEY NIKOLAEV, Laure Lemmens, Thibaud Koessler, Jean-Louis Blouin, Thierry Nouspikel. Circulating tumoral DNA: Preanalytical validation and quality control in a diagnostic laboratory. Analytical biochemistry. 2018/2/1 542; 34-39
  Impact factor: 2.2. Number of citations: 25.
• SERGEY NIKOLAEV; Santoni, Federico; Garieri, Marco; Makrythanasis, Periklis; Falconnet, Emilie; Guipponi, Michel; Vannier, Anne; Radovanovic, Ivan; Bena, Frederique; Forestier, Françoise; Karl Schaller, Valerie Dutoit, Virginie Clement-Schatlo, Pierre-Yves Dietrich, Stylianos E. Antonarakis. Extrachromosomal driver mutations in glioblastoma and low-grade glioma. Nature communications, 5, 2014
  Impact factor: 11.5. Number of citations: 22.